In short, run pbm config --force-resync and try again.
Just copying backup files is not enough. You need to setup PBM config with proper storage settings. All agents must have access and the same RW permissions to the storage. Then run pbm config --force-resync.
PBM does not lookup to configured storage every time. Commands like status, list etc use info in MongoDB first. config --force-resync populates the information.
The replset-remapping feature was designed to use original storage without coping.
I had the same problem, but pbm --force-resync didn’t help. PITR must be OFF that a resync works. I turned it off with pbm config --set pitr.enabled=false and then the resync worked.
Just in case anyone else has the same problem.