Percona Xtrabackup do supports Partial Backups. i.e. backup particular database/tables.
You need to use --include, --tables-file or --databases option to backup selected database/tables.
e.g.
$ mysql --skip-column-names -e “SELECT CONCAT(table_schema,‘.’,table_name) FROM information_schema.tables WHERE table_schema = ‘mydb’;” > tables.txt
$ innobackupex --tables-file=tables.txt /path/to/backupdir/