I have asked internally and it’s not possible to avoid the query, but taking 3.3 seconds shouldn’t be long.
If you have issues with the backup, the developers told me you should consider creating a bug report on https://jira.percona.com/projects/PXB/issues , and you might get asked to run some perf tools to gather some outputs/info about the issue for a workaround/fix
Hi @denis.moraes , welcome to the Percona Forums!
Building on @CTutte 's answer, in the short-term you could also use pt-kill in an aggressive mode i.e. --busy-time 1s --kill which will obviously not stop the query from starting but will minimize how long it runs for. Let us know if this works for you,